{"id":96,"date":"2017-03-20T14:34:03","date_gmt":"2017-03-20T13:34:03","guid":{"rendered":"https:\/\/fhedin.com\/?page_id=96"},"modified":"2018-07-24T16:22:30","modified_gmt":"2018-07-24T14:22:30","slug":"open-source-and-free-software","status":"publish","type":"page","link":"https:\/\/fhedin.com\/?page_id=96","title":{"rendered":"Open source and free software"},"content":{"rendered":"<div class=\"d-inline-block mb-1\" style=\"text-align: left;\">\n<p>The following is a non exhaustive list of open source and free software I wrote as main author, or to which I significantly contributed as collaborator :<\/p>\n<ul>\n<li><strong><a href=\"https:\/\/gitlab.inria.fr\/parallel-replica\/gen.parRep\" target=\"_blank\" rel=\"noopener\">gen.parRep<\/a><\/strong> : C++ implementation of the Generalized Parallel Replica algorithm : see the <a href=\"https:\/\/fhedin.com\/?page_id=190\" target=\"_blank\" rel=\"noopener\"><strong>dedicated Gen. ParRep page<\/strong><\/a>.<\/li>\n<li class=\"col-9 d-inline-block text-gray mb-2 pr-4\"><strong><a href=\"https:\/\/github.com\/FHedin\/mc_LJ\" target=\"_blank\" rel=\"noopener\">mc_LJ<\/a><\/strong> : C program for MC simulations applied to Lennard Jones clusters ; used for producing some results of the <strong><a href=\"https:\/\/fhedin.com\/?page_id=75\" target=\"_blank\" rel=\"noopener\">SA-MC<\/a><\/strong> article<\/li>\n<li class=\"col-9 d-inline-block text-gray mb-2 pr-4\"><strong><a href=\"https:\/\/github.com\/FHedin\/langevin_LJ\" target=\"_blank\" rel=\"noopener\">langevin_LJ<\/a><\/strong> : Langevin and Brownian Dynamics on LJ clusters using openMM interface<\/li>\n<li class=\"col-9 d-inline-block text-gray mb-2 pr-4\"><strong><a href=\"https:\/\/github.com\/MMunibas\/kmeans_proteins_clusters\" target=\"_blank\" rel=\"noopener\">kmeans_proteins_clusters<\/a><\/strong> : C++ implementation of the kmeans algorithm for finding clusters of stable microstates when studying ligand migration in proteins<\/li>\n<li class=\"col-9 d-inline-block text-gray mb-2 pr-4\"><strong><a href=\"https:\/\/github.com\/MMunibas\/read_dcd\" target=\"_blank\" rel=\"noopener\" data-pjax=\"#js-repo-pjax-container\">read_dcd<\/a><\/strong> :\u00a0<span class=\"col-11 text-gray-dark mr-2\"> c++ class and main file example for reading a charmm dcd trajectory<\/span><\/li>\n<li class=\"col-9 d-inline-block text-gray mb-2 pr-4\"><strong><a href=\"https:\/\/github.com\/MMunibas\/rmsd\" target=\"_blank\" rel=\"noopener\" data-pjax=\"#js-repo-pjax-container\">rmsd<\/a><\/strong> :\u00a0<span class=\"col-11 text-gray-dark mr-2\"> C program for calculating rmsd from a charmm DCD file<\/span><\/li>\n<\/ul>\n<\/div>\n<div class=\"d-inline-block mb-1\"><\/div>\n","protected":false},"excerpt":{"rendered":"<p>The following is a non exhaustive list of open source and free software I wrote as main author, or to which I significantly contributed as collaborator : gen.parRep : C++ implementation of the Generalized Parallel Replica algorithm : see the dedicated Gen. ParRep page. mc_LJ : C program for MC simulations applied to Lennard Jones &#8230;<\/p>\n","protected":false},"author":1,"featured_media":0,"parent":10,"menu_order":0,"comment_status":"closed","ping_status":"closed","template":"","meta":{"footnotes":""},"class_list":["post-96","page","type-page","status-publish","hentry"],"_links":{"self":[{"href":"https:\/\/fhedin.com\/index.php?rest_route=\/wp\/v2\/pages\/96","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/fhedin.com\/index.php?rest_route=\/wp\/v2\/pages"}],"about":[{"href":"https:\/\/fhedin.com\/index.php?rest_route=\/wp\/v2\/types\/page"}],"author":[{"embeddable":true,"href":"https:\/\/fhedin.com\/index.php?rest_route=\/wp\/v2\/users\/1"}],"replies":[{"embeddable":true,"href":"https:\/\/fhedin.com\/index.php?rest_route=%2Fwp%2Fv2%2Fcomments&post=96"}],"version-history":[{"count":4,"href":"https:\/\/fhedin.com\/index.php?rest_route=\/wp\/v2\/pages\/96\/revisions"}],"predecessor-version":[{"id":224,"href":"https:\/\/fhedin.com\/index.php?rest_route=\/wp\/v2\/pages\/96\/revisions\/224"}],"up":[{"embeddable":true,"href":"https:\/\/fhedin.com\/index.php?rest_route=\/wp\/v2\/pages\/10"}],"wp:attachment":[{"href":"https:\/\/fhedin.com\/index.php?rest_route=%2Fwp%2Fv2%2Fmedia&parent=96"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}